Close Window

Pathogenic Organism Chart

List of Bacteria & Yeast that can Inhabit the Intestinal Tract


Genus/Organism Description Habitat/Sources of Isolation Pathogenicity Symptoms *Treatment
Aeromonas (PP): Aeromonas is a gram-negative rod belonging to the Vibrionaceae family. There are at least four species of Aeromonas with A. hydrophilia being the most common isolated species in the U.S.1 2 Aeromonads are ubiquitous in fresh water environments. The number present is dependant on the extent of sewage pollution and the ambient temperature. Recent studies have directly attributed Aeromonas as the cause of food-borne infections. The following foods may harbor the organism: raw meat, freshwater fish, shellfish and other seafood. Raw milk can also be a source of infection.3 Definitive experimental evidence for the causative role of Aeromonas in gastrointestinal disorders is still lacking. Although human volunteer studies are inconclusive, epidemiological evidence has shown that the presence of these organisms in stools is significantly more often associated with diarrhea than with the carrier state.4 5 Aeromonas gastroenteritis may affect both children and adults with the highest seasonal incidence occurring in the summer months. Symptoms tend to be generally mild, self-limiting diseases with watery diarrhea.6 Bloody stools have been reported. Aeromonas infections tend to be more acute in children and more chronic in adults.7 8 Most Aeromonas species are generally susceptible to cephalosporins, aminoglycosides, carbapenems, tetracyclines, trimethoprim-sulfamethoxazole and quinolones.9 Susceptibility must guide testing.
*Aeromonas hydrophilia/caviae
*Aeromonas veronii biovar sobria
*Aeromonas biovar veronii
*Aeromonas species


Genus/Organism Description Habitat/Sources of Isolation Pathogenicity Symptoms *Treatment
Bacillus (PP): Bacillus species are spore forming, gram-positive rods belonging to theBacillaceae family.10 11 There are currently 50 valid species within the genus.12 Sources of the diarrheal type ofB. cereus food poisoning include: meats, pasta, vegetable dishes, desserts, cakes, sauces and milk.13 The emetic type of infection is predominately associated with oriental rice dishes. Pasteurized cream, milk pudding and pasta have occasionally been implicated.14 The incidence ofB. cereus infection is increased during the summer months.15 Although part of the normal flora,B.cereus has been established as an opportunistic pathogen.16 The gram-positive spore forming rods ofB.cereus elaborate enterotoxins.17 Both types of food poisoning result from spores that have survived cooking, then germinated, producing vegetative cells that have multiplied.18 NB, it is estimated that only half the isolated strains of B. cereus are enterotoxin positive.19 B. cereus is the etiological agent of two distinct types of food poisoning: 1) The diarrheal type, which is caused by a heat-labile enterotoxic complex. Symptoms include abdominal pain, and diarrhea 8-12 hours after ingestion of the organism.20 21 2) The emetic type, caused by a heat-stable enterotoxin. Nausea and vomiting usually occur 1-5 hours after ingestion.22 23 B. cereus is almost always susceptible to clindamycin, erythromycin and vancomycin.24
*Bacillus
cereus
*Bacillus
species
Meat dishes are a common source of infection in other species ofBacillus such asB. subtilis andB. licheniformis .25 As yet, no toxins or other virulence factors have been identified in association with the symptoms that accompany non-B. cereus species .26 B. licheniformis andB. subtilis are associated with food-borne diarrheal illness.27


Genus/Organism Description Habitat/Sources of Isolation Pathogenicity Symptoms *Treatment
Campylobacter jejuni (P) Campylobacter are gram-negative, non-spore forming rods belonging to the Campylobacterace ae family.28 In total there are 18 species and subspecies within the genus.29 Poultry is a key source of infection, in particular chicken. Red meat and shellfish can also harbor the organism.30 Other sources include unpasteurized milk, and water contaminated by wild birds.31 Recognized as the principle cause of diarrhea in humans. C. jejuni and C. coli are the most common species associated with diarrheal illness.32 The infective dose as yet has not been clearly defined, but it is thought that as little as 1000 organisms are capable of causing infection.33 The incubation period can be 2 to 10 days, though is usually 2 to 5 days.34 Symptoms can include fever, abdominal cramping, diarrhea (often bloody) abdominal pain and fever. Relapses may occur in 5%-10% of untreated cases.35 Erythromycin is the drug of choice for treating C. jejuni infections. Ciprofloxacin may be an alternative drug.36


Genus/Organism Description Habitat/Sources of Isolation Pathogenicity Symptoms *Treatment
Candida (PP): The genus Candida is comprised of approximately 200 different species.37

C. albicans is the most commonly isolated strain from the GI tract.38
Most sources of Candida infection are thought to be of endogenous origin.39

While yeast are ubiquitous in the environment and are found on fruits, vegetables and other plant materials, contamination from external sources is linked to patients and health care workers.40 41
A normal inhabitant of the GI tract. May become an opportunistic pathogen after disruption of the mucosal barrier, imbalance of the normal intestinal flora and/or impaired immunity.42 43 44 45

Risk factors for colonization include: Antibiotics, corticosteroids, antacids, H2 blockers, oral contraceptives, irradiation, GI surgery, Diabetes mellitus, burns, T cell dysfunction, chronic stress and chronic renal disease.46 47 48 49
The most common symptom attributable to non-invasive yeast overgrowth is diarrhea.50

Symptoms of chronic candidiasis affect four main areas of the body:
Intestinal system – symptoms include: diarrhea, constipation, abdominal discomfort, distention, flatulence and rectal itching.

Genital Urinary system – symptoms include: menstrual complaints, vaginitis, cystitis and urethritis.

Nervous system – symptoms include: severe depression, extreme irritability, inability to concentrate, memory lapses and headaches.

Immune system – symptoms include urticaria, hayfever, asthma, and external otitis. Sensitivities to tobacco, perfumes, diesel fumes and other chemicals.51 52
Currently, standard texts provide no specific antifungal guidelines for GI overgrowth of Candida.

Oral azoles have been recommended for extra intestinal infections.

Susceptibility testing is advised due to increasing drug resistance.53 54
*Candida albicans
*Candida famata
*Candida glabrata
*Candida guilliermondii
*Candida krusei
*Candida lusitaniae
*Candida pseudotropicalis
*Candida rugosa
*Candida stellatoidea
*Candida tropicalis
*Candida zeylanoides


Genus/Organism Description Habitat/Sources of Isolation Pathogenicity Symptoms *Treatment
Citrobacter (PP): Citrobacter is a gram-negative rod belonging to the Enterobacteriaceae family.55

Citrobacter contains 9 named species and two unnamed genomospecies.56

The genus Clostridium are anaerobic gram- positive, spore-forming bacteria.66
Common in the environment and may be spread by person-to person contact. Several outbreaks have occurred in babies in hospital units.57 58

Isolated from water, fish, animals and food.59

The organism has many natural habitats including hay, soil, cows, horses and dogs.67

Almost 50% of neonates carry this organism asymptomatically as part of their gastrointestinal flora during the first year of life. This rate decreases sequentially to about 3% in adults and less in children over two years of age.68 69
Citrobacter is considered an opportunistic pathogen and therefore can be found in the gut as part of the normal flora.60

C. difficile is the major cause of antibiotic-associated diarrhea and pseudomembranous colitis and the most common cause of hospital-acquired diarrhea.70

Isolation of C. difficile without a positive toxin test has little clinical value. It is important to test for both toxins A and B in the stool. Toxin A is an enterotoxin and toxin B is a cytotoxin that inhibits bowel motility. It is thought that both toxins are important in the pathogenesis.71 72
Citrobacter has occasionally been implicated in diarrheal disease, particularly C. freundii and C. diversus and C. koseri. 61

Mild cases of C. difficile disease are characterized by frequent, foul-smelling, watery stools. More severe symptoms, indicative of pseudomembranous colitis, include diarrhea that contains blood and mucous, and abdominal cramps.73
Currently, standard texts provide no specific antimicrobial guidelines for GI overgrowth of Citrobacter. 62 63 Carbapenems and fluroquinolones are the recommended antibiotics for extra-intestinal sites.64 65 Severe C. difficile intestinal disease is usually treated with oral vancomycin or metronidazole. However, antimicrobial therapy often results in relapse of the disease.74 In addition, there is concern that oral vancomycin can lead to the emergence of vancomycin-resistant Enterococci. 75
*Citrobacter amalonaticus
*Citrobacter braakii
*Citrobacter diversus
*Citrobacter freundii
*Citrobacter freundii/youngae
*Citrobacter freundii complex
*Citrobacter koseri
*Citrobacter species
Clostridium difficile (PP)


Genus/Organism Description Habitat/Sources of Isolation Pathogenicity Symptoms *Treatment
Cryptococcus (PP): Cryptococcus is a yeast-like fungus, which closely resembles the genus Candida. 76

The genus contains a number of species, of which only C. neoformans is considered to be a human pathogen.77

The genus Edwardsiella is a gram-negative rod that belongs to the Enterobacteriaceae family.86

To date there are three species, though only E. tarda is associated with human disease.87
Found in the excreta of pigeons and other birds in most parts of the world. The yeast is associated with aged bird droppings that have accumulated over a long period of time on window ledges, vacant buildings and other roosting sites.78

Isolated from cold-blooded animals such as fish and reptiles and their environment.88

Infection is more common in tropical and subtropical environments and developing countries.89
Can be an opportunistic pathogen, predominately in the immunocompromised host.79

Cryptococcus is considered one of the defining diseases of AIDS. Patients with Cryptococcus and serologic evidence of HIV are considered to have AIDS.80

E. tarda is considered an opportunistic pathogen, occasionally causing acute gastroenteritis.90 91
Diarrhea has been associated with Cryptococcal infection.81

Usually infection occurs in the tissue of the central nervous system but occasionally can produce lesions in the skin, bones, lungs, or other internal organs.82

Diarrheal disease is associated with infection, with a clinical picture similar to Salmonella enteritis.92 Isolation of the E. tarda is more common in young children and the elderly.93
Currently, standard texts provide no specific antimicrobial guidelines for GI overgrowth of Cryptococcus. 83 84 Fluconazole is considered the primary antimicrobial agent in extraintestinal sites.85

If antibiotic treatment is required, ampicillin, trimethoprim-sulfamethoxazole and ciprofloxacin have all been found to be effective agents.94
*Cryptococcus albidus
*Cryptococcus humicolus
*Cryptococcus laurentii
*Cryptococcus luteolus
*Cryptococcus neoformans
*Cryptococcus species
*Cryptococcus terreus
*Cryptococcus uniguttulatus
Edwardsiella tarda(P)


Genus/Organism Description Habitat/Sources of Isolation Pathogenicity Symptoms *Treatment
E.coli Shiga-like toxin Shigatoxin-producing E. coli strains are referred to as STEC. This includes the 0157 and many other STEC serogroups. 95

In total, at least 100 serotypes have been isolated from persons with diarrhea. 96
0157 STEC colonize dairy and beef cattle, which is why ground beef is the most common infection vehicle. However, raw milk, sausage, roast beef, unchlorinated water, apple cider, and raw vegetables have also been implicated. 97 E. coli 0157:H7 and 0157:non-motile (0157 STEC) produce one or more Shiga toxins and, are the most commonly identified diarrheagenic E.coli isolates in North America and Europe. 98

Non-toxin-producing strains are normal in the human intestine. 0157 STEC spreads easily from person to person because the infectious dose is low. 99
The STEC strains cause a spectrum of illness that can present as mild non-bloody diarrhea, severe bloody diarrhea (hemorrhagic colitis), and hemolytic uremic syndrome (HUS).100 About 6% of 0157 STEC patients develop HUS. 101 Antimicrobial therapy for 0157 STEC has NOT been demonstrated to be effective or safe, except for cases of cystitis and pyelonephritis. 102

Antimicrobial therapy for intestinal disease may enhance toxin release and predispose for HUS. 103
Enterobacter cloacae (PP) Gram-negative rod that is part of the Enterobacteriaceae family. 104

There are 14 species in the genus, though only E. cloacae has been associated with GI infection. 105 106
Widely distributed in the environment. Water, soil, sewage and cornstalks have all been identified as sources of contamination.107 108 Usually considered a commensal organism; however, strains of E. cloacae have been shown to produce a heat-stable toxin similar to that produced by E.coli. 109 Has been associated with diarrhea in children. 110 111 Currently, standard texts provide no specific antimicrobial guidelines for GI overgrowth of Enterobacter. 112 113

Carbapenems are recommended for extra-intestinal sites. 114
Geotrichum (PP): Geotrichum are yeast belonging to the Endomyceteaceae family. There are several species within the genus, of which G. candidum is the most common.115 This organism can be found in soil, dairy products and in human skin and mucosae. 116 Usually only considered an opportunistic pathogen in immune-compromised hosts. 117 118

Geotrichum candidum is the etiological agent of Geotrichosis. 119
Symptoms of Geotrichum infection have been associated with diarrhea and enteritis. 121 122

Symptoms of Geotrichosis may resemble those of candidiasis. 123
Currently, standard texts provide no specific antifungal guidelines for GI overgrowth of Geotrichum. Oral azoles and have been recommended for extra intestinal infections. Susceptibility testing is advised owing to increasing drug resistance. 124 125
*Geotrichum candidum
*Geotrichum capitum
Geotrichum may also play a role in IBS.120
*Geotrichum species


Genus/Organism Description Habitat/Sources of Isolation Pathogenicity Symptoms *Treatment
Hafnia alvei (PP) Hafnia is a gram- negative rod considered part of the Enterobacteriaceae family. There is only one species of Hafnia– H. alvei–which was previously a member of the Enterobacter genus.126 Commonly found in warm-blooded animals, particularly birds. Other environmental sources include contaminated water, sewage, food, and dairy products.127 This organism is a natural inhabitant of the GI tract in humans. Hafnia strains are opportunistic pathogens; community and hospital outbreaks have been associated with GI infection.128 Diarrheal illness has been associated with outbreaks and virulence factors similar to toxigenic E.coli have been described.129 Hafnia strains are usually susceptible to piperacillin, imipenum, quinolones and the newer cephalosporins.130
Helicobacter pylori (P) The genus Helicobacter are gram-negative, non-spore forming rods. There are currently 19 species within the genus.131

Seroprevalence of H. pylori varies from 20% in young adults in developed countries to sometimes more than 90% in developing countries.132
Reservoirs of infection include the intestinal tract of mammals and birds. Mode of transmission is usually via the fecal-oral or oral-to-oral route.133 H. pylori causes chronic gastritis and predisposes to gastric and duodenal ulcers. Increased risk of gastric carcinoma is associated with infection.134

It is estimated that 50% of the world’s population is infected with H. pylori. 135
Those infected with H. pylori may develop acute gastritis with symptoms of abdominal pain, nausea and vomiting, usually within two weeks of infection. Many patients have recurrent abdominal symptoms (non-ulcer dyspepsia) without ulcer disease.136 Cure rates require multi-drug regimens along with antacid medications.137

The most successful treatment includes a combination of metronidazole, omeprazole and clarithromycin.138




Genus/Organism Description Habitat/Sources of Isolation Pathogenicity Symptoms *Treatment
Morganella morganii (PP) Morganella is gram-negative rod belonging to the Enterobacteriaceae family.187

Currently, there are 3 species within the genus.188
M. morganii originates from the gill and skin of fish. It is possible that it may cross-contaminate during handling of fish in processing plants and restaurants.189 The role of Morganella as an etiological agent in diarrheal disease is controversial. Although Morganella constitutes part of the normal flora, in certain hosts it may be a potential pathogen.190 191

Recently it was shown that the majority of clinical isolates of Morganella belonged to the subsp Morganii. 192
Diarrhea has been associated with infection of this organism.193 194 Currently, standard texts provide no specific antimicrobial guidelines for GI overgrowth of Morganella. 195 196

Carbapenems, 3rd and 4th generation cephalosporins and fluroquinolones are the agents recommended for extra-intestinal infections.197
Plesiomonas shigelloides (PP) Plesiomonas is a gram-negative rod belonging to the Vibrionaceae family, though it does contain the Enterobacteriaceae antigen. P. shigelloides is the only species in the genus.198 199 Usually found in fresh water or estuarine water. Occurs in fish, shellfish, oysters, toads, snakes, monkeys, dogs, cats, goats, pigs, poultry, and cattle.200

There is a low incidence of Plesiomonas shigelliodes in the US and Europe.201

In Asia, however, the organism contributes to a significant proportion of traveler’s diarrhea.202 203
P. shigelloides is not a natural inhabitant of the GI tract.204

Although feeding studies with humans resulted in the excretion of the organism (but not diarrhea) from about one third of the volunteers, several epidemiological studies suggest that Plesiomonas is a possible agent in GI disease. It has been isolated from human stool specimens in the absence of symptoms and may be difficult to attribute as the cause of diarrhea in some cases.205
Symptoms range from short- lived episodes of watery stools to several days of dysentery-like diarrhea. Has not been reported to affect specific age groups more often than others.206 207

Accompanying symptoms vary and may include abdominal pain, nausea, vomiting, chills, headaches and dehydration. 208

Infections with P. shigelloides are usually self-limiting, lasting up to 7 days and occasionally longer.209 210
P. shigelliodes is susceptible to most major classes of antibiotics, including trimethoprim, cephalosporins, and quinolones.211


Genus/Organism Description Habitat/Sources of Isolation Pathogenicity Symptoms *Treatment
Proteus (PP): Proteus is a gram-negative rod belonging to the Enterobacteriaceae family.212

10 species in total are attributed to the genus of which P. mirabilis is considered the most important.213
Food has been implicated as a vehicle of infection.214 Part of the normal flora of the GI tract, though has been shown to be an independent causative agent of intestinal disorders.215

May also play a role as an opportunistic organism in enteric infection due to other pathogens.216
Occasionally implicated in diarrheal disorders.217 218

Recently, it has been suggested that P. mirabilis may be an etiological agent in rheumatoid arthritis. The mechanism may be related to the molecular cross reactivity between P. mirabilis and the HLA antigens, specifically HLA-DR4.219
Currently, standard texts provide no specific antimicrobial guidelines for GI overgrowth of Proteus. 220 221

Ampicillin is recommended for extra-intestinal infections of P. mirabilis, followed by trimethoprim- sulfamethoxazole.222
*Proteus mirabilis
*Proteus penneri
*Proteus vulgaris
Provedencia alcalifaciens (PP) Provedencia is a member of the Enterobacteriaceae family of which there are 5species.223 224 GI tract infection with P. alcalifaciens has been associated with overseas travel.225 Provedencia is not normally present in a healthy GI tract.226

Its pathogenic role may lie in the ability of the organism to take advantage of conditions created by other infectious microbes.227
This organism has been implicated as a cause of diarrhea.228 229

P. alcalifaciens is thought to induce invasive diarrhea in patients by invading cells in the intestine, thus producing inflammatory changes in the ileum.230
Currently, standard texts provide no specific antimicrobial guidelines for GI overgrowth of Providencia. 231 232

3rd generation cephalosporins and fluroquinolones are recommended for extra-intestinal sites.233 234


Genus/Organism Description Habitat/Sources of Isolation Pathogenicity Symptoms *Treatment
Pseudomonas (PP): Pseudomonas species are aerobic, non-spore forming gram-negative rods.235

There are 10 species in the genus, though P. aeruginosa is considered the most important pathogen.236
Found in water and soil as well as fruits and vegetables. Bottled water can be a common source of infection. Because the organism is able to survive aqueous environments, it is an important nosocomial pathogen. Pseudomonas can also be found on a number of surfaces and in aqueous solutions.237 Pseudomonas is considered an opportunistic pathogen.238

Animal studies have isolated an enterotoxin thought to be responsible for causing diarrhea.239
Associated with diarrheal infection, particularly in the immunocompromised host.240 241

Pseudomonas can also be an etiological agent of antibiotic-associated diarrhea.242
Ciprofloxacin is recommended for the treatment of Pseudomonas-induced antibiotic-associated colitis.243

Pseudomonas is usually susceptible to antipseudomonal penicillins, aminoglycosides, carbapenems, 3rd generation cephalosporins and gentamycin.244 245
*Pseudomonas aeruginosa
*Pseudomonas species
Saccharomyces cerevisiae (PP) Saccharomyces are yeast belonging to the Sacccharomycetac eae family. Currently there are 18 species within the genus of which S. cerevisiae is the most common.246 247 S. cerevisiae is a commonly used industrial microorganism and is ubiquitous in nature, being present on fruits and vegetables. Also known as Baker's Yeast or Brewer's Yeast, this organism has been used for centuries as leavening for bread and as a fermenter of alcoholic beverages.248 249 S. cerevisiae commonly colonizes mucosal surfaces, and is rarely considered an opportunistic pathogen.250 251 252

Severe immunosuppression, prolonged hospitalization, and antibiotic therapy are all associated withSaccharomyces infection..253 Overgrowth may be associated with dietary ingestion of S. cerevisiae and/or S. boulardii as part of a
Studies have shown that patients with S. cerevisiae overgrowth usually have an underlying disease.254

Disseminated infections are thought to arise from the gastrointestinal tract.255
Currently standard texts provide no specific antifungal guidelines for GI overgrowth of Saccharomyces.


Genus/Organism Description Habitat/Sources of Isolation Pathogenicity Symptoms *Treatment
Salmonella (P): Salmonella are members of the Enterobacteriaceae family and as such are gram-negative rods.256 Animals and birds utilized for meat are subject to contamination with Salmonella. Eggs, cereals and cereal products are other sources of contamination.257

The incidence of infection increases over the summer, and is predominantly associated with acute diarrhea in infants.258
Salmonella are considered frank pathogens in humans. These organisms are NOT part of the normal bowel flora. Salmonella species are acid-sensitive, invasive, and produce enterotoxins in the GI tract. Several thousand cells may be needed to cause infection.259 Gastroenteritis and diarrhea are caused by more than 2000 serotypes producing infections limited to the mucosa and submucosa of the GI tract. S. typhimurium and S. enteritidis are the serotypes most common in the US. Bacteremia and extraintestinal infections occur by spread from the GI tract, and any serotype is capable of causing bacteremia. 260 261 Antimicrobial therapy is not recommended for uncomplicated Salmonella gastroenteritis.262

Antimicrobial therapy is warranted in cases of bacteremia. Enteric fever (typhoid fever) is characterized by prolonged fever and multisystem involvement. This is a life-threatening infection caused by S. typhi or S. paratyphi. Antimicrobial therapy is needed in cases of typhoid fever.263
*Salmonella Group C
and D
*Salmonella arizonae
*Salmonella group A
*Salmonella group B
*Salmonella group C
*Salmonella group D
*Salmonella group E
*Salmonella group E + G
*Salmonella paratyphi A
*Salmonella paratyphi B
*Salmonella paratyphi C
*Salmonella species
*Salmonella typhi


Serratia marcesens (PP) Serratia is a gram-negative rod belonging to the Enterobacteriaceae family. 264 Serratia is more often associated with nosocomial infection, and seldom occurs in the community. The most common route of transmission is hand-to-hand spread via nurses, physicians and other healthcare workers. 265 A natural inhabitant of the GI tract, though on occasion can become an opportunistic pathogen.266 In neonates the gastrointestinal system is an important source of the organism. 267 Currently, standard texts provide no specific antimicrobial guidelines for GI overgrowth of Serratia. 268 269 Third generation cephalosporins, carbapenems, and fluroquinolones are the recommended antibiotics for extra-intestinal infections.270


Genus/Organism Description Habitat/Sources of Isolation Pathogenicity Symptoms *Treatment
Shigatoxin-producing E.coli (STEC )-See E.coli Shiga-like toxin.          
Shigella (P): Shigella are members of the Enterobacteriaceae family. There are 4 serogroups that have historically been treated as species: -S. dysenteriae (Serogroup A) -S. flexneri (Serogroup B) -S. boydii (Serogroup C) -S. sonnei (Serogroup D).271 Spread from person to –person by the fecal-oral route, especially in overcrowded areas and areas with poor sanitary conditions. Ingestion is also a primary source of infection. 272

A predominant organism responsible for acute diarrheal disease in infants and children. 273
Shigella is only found in humans at times of infections and is NOT part of the normal bowel flora. All species are considered frank pathogens in humans. 274 Symptoms can range from mild to explosive diarrhea. It is somewhat acid-resistant, invades epithelial cells, and produces toxins. Less than 100 cells are required to initiate infection.275 276

S. dysenteriae is rare in the US and causes classic dysentery, producing the Shiga toxin. S. sonnei is most common in the US, and usually produces only a watery diarrhea. 277
Shigella infections are often treated with antibiotics, and antimicrobial susceptibility testing is recommend owing to widespread resistance. 278

Resistant strains are usually susceptible to the fluroquinolones. 279
*Shigella boydii
*Shigella dysenteriae
*Shigella flexneri
*Shigella sonnei
*Shigella species


Genus/Organism Description Habitat/Sources of Isolation Pathogenicity Symptoms *Treatment
Staphylococcus aureus (PP) Members of the genus Staphylococcus are gram-positive cocci. Currently, the genus is composed of 32 species and 15 subspecies.280 Foods that require considerable handling during preparation or that are kept at slightly elevated temperatures after preparation are frequently involved in staphylococcal food poisoning. The key foods associated with staphylococcal food poisoning include meat and meat products; poultry and egg products; salads such as egg, tuna, chicken, potato, and macaroni; bakery products such as cream-filled pastries, cream pies, and chocolate éclairs; sandwich fillings; and milk and dairyproducts.281 282 Food poisoning is often attributed to the staphylococcal enterotoxin.283

The toxin produced by the bacteria is very heat-stable and therefore not easily destroyed by heat at normal cooking temperatures. The toxin can remain, despite the organism being destroyed.284

There is considerable variation in susceptibility to the enterotoxin in adults. Children and the elderly have the highest degree of susceptibility. 285
Symptoms of staphylococcal food poisoning usually appear within 1 to 6 hours after ingestion. The individual response to the toxin may vary and depends upon the amount of contaminated food eaten, the amount of toxin ingested, and general health status.286

Nausea, vomiting, abdominal cramping, and diarrhea are the most common symptoms. In more severe cases, headache, muscle cramping, and changes in blood pressure and pulse rate may occur.287

Recovery generally takes two days. It is not unusual for complete recovery to take three days and sometimes longer.288 289
In most cases, treatment for S. aureus infection is not necessary and complete recovery usually occurs after cessation of symptoms.290


Genus/Organism Description Habitat/Sources of Isolation Pathogenicity Symptoms *Treatment
Vibrio (PP): Vibrio are members of the Vibrionaceae family and as such are gram negative rods.291

There over 35 species within the genus, of which only about one third are pathogenic for humans.292
Pathogenic Vibrio are part of the autochthonous microbial flora in brackish and marine environments in temperate or tropical regions. V. cholerae and V. mimicus may be found in fresh water and in birds and herbivores.293 Cholera is caused by V. cholerae 01.294

Gastroenteritis is classically associated with V. cholerae non01, V. parahaemolyticus, V. hollisae, V. mimicus, V. fluvialis, V metschnikovii, and V. furnissii. 295
While classic cholera is rare in the US, the rice-water stool remains the characteristic symptom, among others and its infectious dose is quite large.296

Gastroenteritis caused by other Vibrio sp. presents as diarrhea and may be accompanied by cramps, nausea, vomiting and fever.297
Antimicrobial therapy reduces the frequency and duration of the diarrhea and shortens the post-infective period of shedding of V.cholerae. 298

Tetracycline or less commonly furazolidone are drugs of choice, though antibiotic resistance is increasing.299 300
*Vibrio cholerae
*Vibrio fluvialis
*Vibrio furnissii
*Vibrio hollisae
*Vibrio metschnikovii
*Vibrio mimicus
*Vibrio parahaemolyticus
*Vibrio species
Yeast not candida (PP): Yeast are unicellular, budding cells and are usually round to oval in shape, though some forms have demonstrated elongated and irregular shapes.301 Yeast are ubiquitous in the environment and can be found on fruits, vegetables and other plant materials.302

They can also live as normal inhabitants both within and on the body.303
Less common yeast such as those outlined in this section should only be considered opportunistic pathogens in the immuno compromised host. 304 305 306 307 308 309 310 311 312 Disseminated infections may include the intestinal tract and are usually associated with immunosuppressive diseases or conditions such as leukemia, organ transplant, multiple myeloma, aplastic anemia, diabetes mellitus with ketoacidosis, ICU patients, lymphoma, solid tumors and AIDS.313 314

Immunosuppressive therapy such as corticosteroids, chemotherapeutic agents and cyclosporine can also enhance fungal overgrowth.315
Currently, standard texts provide no specific antifungal guidelines for GI overgrowth of the fungi mentioned.316 317

Treatment is at the discretion of the practitioner, and should be based upon clinical symptoms and a positive reculture of the organism.
Blastoschizomyces:
*Blastoschizomyces capitatus
Hansenula anomala
Pichia ohmeri
Rhodotorula
*Rhodotorula glutinis
*Rhodotorula rubra
*Rhodotorula species
Trichosporon
*Trichosporon pullulans
*Trichosporon species


Genus/Organism Description Habitat/Sources of Isolation Pathogenicity Symptoms *Treatment
Yersinia (PP): Yersinia are gram-negative enteropathogenic bacilli that belong to the Enterobacteriaceae family.318

At present, there are at least 10 species within the Yersinia genus.319
Y. pseudotuberculosis is found naturally in numerous wild and domestic mammals and birds. Y. enterocolitica can be found in all warm-blooded wild, domestic and pet animals and occasionally in some fish. Pigs are important reservoirs for the human strains of Y. enterocolitica. 320

Infections may be acquired by ingestion of contaminated food or water, or, rarely by direct person-to- person transmission in schools and hospitals.321
Intestinal yersiniosis may present in three clinical forms: enteritis, terminal ileitis, or mesenteric lymphadenitis causing “pseudoappendicitis” and septicemia.322

Y. entercolitica and Y. pseudotuberculosis are most commonly isolated from cases of gastroenteritis. Both would be considered significant isolates from stool. Both of these organisms show preference for lymphatic tissue and can spread via the bloodstream.323

Yersinia infection has been shown to induce chronic inflammatory bowel disorders such as chronic diarrhea and IBD. Rheumatoid arthritis, reactive arthritis and unspecified arthralgias have also been noted after Yersinia infection.324 325
Watery and sometimes bloody stools, fever, vomiting, abdominal pain are common with Y. enterocolitica, particularly in adults and less frequently in children but rarely in Y. pesudotuberculosis infection which is more common in children exhibiting terminal ileitis, lymphadenitis, and pseudoappendicitis.326

Animal and in-vitro studies have isolated an antigen designated Yersinia pseudotuberculosis mitogen (YPM) that is capable of increasing epithelial permeability.327

Chronic GI disease (eg intermediate colitis, UC, CD may follow Y. enterocolitica infection, though the exact role this organism plays has not been fully elucidated.328 329 330 331
Intestinal infections with Y. enterocolitica and Y. pseudotuberculosis are usually self-limiting and do not require antibiotic therapy. In cases of complicated gastroenteritis, doxycycline or trimethoprim- sulfmethoxazole are the antibiotics of choice.332
*Yersinia enterocolitica
*Yersinia pseudotuberculosis
*Yersinia species